QroDB
Quercus robur multi-omics database
Download

Data downloads

Every file below is a direct product of the analysis pipeline and can be used locally as-is (IGV / local JBrowse2 deployment, BLAST database construction, sequence extraction). Expression matrices and sample metadata can also be exported per gene or per library.

7
Files available
645
RNA-seq libraries
File list
Use the button on the right to download
FileCategorySizeDescription
cds.fna.gz Sequences 17.1 MB CDS nucleotide sequences Download
protein.faa.gz Sequences 9.1 MB Protein sequences Download
Qro.Chr.fa.gz Genome / JBrowse 218.5 MB Reference genome (bgzip-compressed; readable by samtools faidx / JBrowse2) Download
Qro.Chr.fa.gz.fai Genome / JBrowse 383 B Reference genome (bgzip-compressed; readable by samtools faidx / JBrowse2) Download
Qro.Chr.fa.gz.gzi Genome / JBrowse 190.1 KB Reference genome (bgzip-compressed; readable by samtools faidx / JBrowse2) Download
Qro.Chr.gff3z Genome / JBrowse 14.0 MB GFF3 structural annotation (sorted, tabix-indexed) Download
Qro.Chr.gff3z.tbi Genome / JBrowse 127.6 KB GFF3 structural annotation (sorted, tabix-indexed) Download
Export expression data
Expression of one gene across all libraries
Examples:
Expression of all genes in one library
Examples:
Tips for local browsing
  • Download Qro.Chr.fa.gz + .fai + .gzi, then in IGV choose Genomes → Load Genome from File to browse offline.
  • The GFF3 is sorted by (chromosome, start) and tabix-indexed, so it can be used directly by JBrowse2 / IGV.
  • The FASTA is bgzip-formatted and requires BGZF-aware tools (samtools ≥ 1.x works).